SE2020066

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5268
  • Medicago truncatula
  • SE2020066
  • Mutator
  • M30
  • MtChr4:33139462-33139845
  • ATTATTTAG
  • TAGGCTTAAATGCTCTTTTAGTCCCTTAACTTGATTTTAAGTATCGGTTTGGTCCCATAAATAATCAAAAATCCGTTTAGGTCCTTTAACTTTATTTAAAGTATCAGTTTGGTCCTTTCTGTTAATTTAGTTCAAAAATACGTTAAGTTTAGGGATCAAACT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTATT                                              GT            A    C    A  C                                                                TAC         A  GA  -A    AATAC     AAATA   TAA  GAT
      TAGGCTTAAATGCTCTTTTAGTCCCTTAACTTGATTTTAAGTATCG  TTGGTCCCATAA TAAT AAAA TC GTTTAGGTCCTTTAACTTTATTTAAAGTATCAGTTTGGTCCTTTCTGTTAATTTAGTTCAAAAA   GTTAAGTTT GG  TC  AACT     TAATT     AGT   GG   
      ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| ||  ||  ||||     |||||     |||   ||   C
      ATCCGAATTTACGAGAAAATCAGGGAATTGAACTAAAGTTCATAGC  AACCAGGGTATT ATTA TTTT AG CAAATCTAGGGAATTGAAATAAATTTCATAGTCAAACTAGGAAAGATAATTAAATTAAGTTTTT   CAATTTAAA CC  GG  TTGA     ATTAA     TCA   CC   
TTTATT                                              AA            C    T    C  A                                                                TTC         A  AG  AA    -ATAA     -----   TAA  AAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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