SE2020071

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5273
  • Medicago truncatula
  • SE2020071
  • Mutator
  • M32
  • MtChr4:31500372-31500580
  • TTTATTTAG
  • TATTTAGAGTGGTGATACATGTACACCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT  TT     --T    A      T       CATGTGGCA       T  ----       -------A   AAAA  -  GACATGTGGCAAGGAAAAGTGAGAGGAGATGAA
  TA  TAGAG   GGTG TACATG ACACCTT         ATACACC CT    TACACCC        CAC    TC CT                                 
  ||  |||||   |||| |||||| |||||||         ||||||| ||    |||||||        |||    || ||                                 A
  AT  ATTTC   TTAC ATGTAC TGTGGGA         TATGTGG GA    ATGTGGG        TCC    CT TA                                 
    TT     CTT    A      T       ---AATTAG       -  TAAC       GTACGTAA   ----  G  AAACCATTAAAGTAGAGTGTTGGTATGAAAGAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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