SE2020078

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5280
  • Medicago truncatula
  • SE2020078
  • Mutator
  • M4
  • MtChr3:33214413-33214725
  • TTTTTATTG
  • GGGGTTAATAGGTCTTTACTCCCTGTAATATAGGTTATTTCTGGTTTTCCCCTCTGTAAAATATTTTTTTTATTTACCCCCTTGTAAAATATTTTTGTTTTGATTTACCCCCCTAATAGGCCAAACAAAAATAAAAATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
 TTTTTATT                  -                                                     -                                      C                      AAA     CTTAAAAA
         GGGGTTAATAGGTCTTTA CTCCCTGTAATATAGGTTATTTCTGGTTTTCCCCTCTGTAAAATATTTTTTTT ATTTACCCCCTTGTAAAATATTTTTGTTTTGATTTACC CCCTAATAGGCCAAACAAAAAT   AATTT        
         |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||   |||||         
         TCCCAATTATCCAGAAAT GGGGGACATTATATCCAGTAAAGACCAAAAGGGGGGACATTTTATAAAAAAAA TAAATGGGGGGACATTTTATAAAAACAAAACTAAATGG GGGATTATCCGGTTTGTTTTTG   TTAAA        
TATTATTTT                  A                                                     C                                      A                      --G     ATAAAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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