Plant MITE

SE2010081

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5283
Medicago truncatula
SE2010081
Tc1/Mariner
St6
MtChr8:4747788-4748079
TA
TACTCCCTCCGTCTCATAATAACTGA

Secondary structure and sequence

TSD TIR

5'

3'

             T  TAA       TC     -      -       CCTAAAATAACTGACATATTCACTTTTTAATGCAATATTAATTCCTTTTTCCAATTATAACTCTAATTAATACTACTTTCATCACTCCCAATTCAATAT
TACTCCCTCCGTC CA   TAACTGA  CTTTT GTCAAA ATATTGT                                                                                                   
||||||||||||| ||   |||||||  ||||| |||||| |||||||                                                                                                    
ATGAGGGAGGCAG GT   ATTGACT  AGAAA GAATAA GTGTGAA                                                                                                   
             C  TAA       CA     C      A       TAATTTTTTTTATATAATTACTTCCTTTCTCTTTTTACCAAAATTCGCGAGAACAGTTCATAACCACGTAAATAGTAATAGTATTTACGTTTGATCTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010081

TACTCCCTCCGTCTCATAATAACTGATCCTTTTGTCAAAATATTGTCCTAAAATAACTGACATATTCACTTTTTAATGCAATATTAATTCCTTTTTCCAATTATAACTCTAATTAATACTACTTTCATCACTCCCAATTCAATATATTCTAGTTTGCATTTATGATAATGATAAATGCACCAATACTTGACAAGAGCGCTTAAAACCATTTTTCTCTTTCCTTCATTAATATATTTTTTTTAATAAGTGTGAAATAAGCAAAGAACTCAGTTAAATTGCGACGGAGGGAGTA

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