Plant MITE

SE2030082

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5284
Medicago truncatula
SE2030082
hAT
Hat10
MtChr7:21794042-21794226
CCTTTAAC
TATGAAGCACAAATACGAACATG

Secondary structure and sequence

TSD TIR

5'

3'

CCTTTAACC         CA     GAA A  ----------  -          C   CACCGCTAATAATTTGAGAAAATCACATAATTCAGTGTAA
         TATGAAGCA  AATAC   C TG          GA CACTGACACG CGA                                        
         |||||||||  |||||   | ||          || |||||||||| |||                                         
         ATACTTCGT  TTGTG   G GC          CA AGCCACAGCC TGT                                        
CAATTTCCA         AC     -AG A  CTAATCGACA  G          -   ACACAGCACAGGTTGTGGCTGTGCTGTGACTGTGTATGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030082

CCTTTAACCTATGAAGCACAAATACGAACATGGACACTGACACGCCGACACCGCTAATAATTTGAGAAAATCACATAATTCAGTGTAATTGTATGTGTCAGTGTCGTGTCGGTGTTGGACACGACACATGTCCGACACCGAGACACAGCTAATCCGAGGAGTGTTCATGCTTCATAACCTTTAAC

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