SE2020083

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5285
  • Medicago truncatula
  • SE2020083
  • Mutator
  • M35
  • MtChr6:3633742-3634188
  • AATTTTAAT
  • TGGCTTAATTATACTTTTGATCCTCGTGTTTTGGCCTACTCATGAAACTGATCATGCATTTTTAAAACAGAACAAAACGGTCCTTCAATTATCATTTTTGTTGCATTTTTCATCATACCTCCTATTTT

Secondary structure and sequence

TSD    TIR
5'



3'
AATTTTAA                   A    C         C               A      A         C    C                             G        A  A             CAAACCC  T         -        ATTTTAGGTA          TACC   A GCTCAACCATGAAATCAACAATGAATAAAACATGTGGGC
        TGGCTTAATTATACTTTTG TCCT GTGTTTTGG CTACTCATGAAACTG TCATGC TTTTTAAAA AGAA AAAACGGTCCTTCAATTATCATTTTTGTT CATTTTTC TC TACCTCCTATTTT       CA AAACGCAGA AAATGGCA          GTTTTAGACC    CCT T                                       
        ||||||||||||||||||| |||| ||||||||| ||||||||||||||| |||||| ||||||||| |||| ||||||||||||||||||||||||||||| |||||||| || |||||||||||||       || ||||||||| ||||||||          ||||||||||    ||| |                                       A
        ACCGAATTAATGTGAAAAC AGGG CATAAAACC GATGAGTGCTTTGAC AGTACG GAAAATTTT TCTT TTTTGCCAGGAAGTTAATAGTAAAAACAA GTAAAAAG AG ATGGGGGGTAAAA       GT TTTGCGTCT TTTATTGT          CAAAATCTGG    GAT T                                       
 AATTTTA                   C    T         A               C      G         A    A                             A        C  A             -TAAGAA  T         A        ----------          ----   - AAAAAAAAACAATCACACAACTTATCTTACCTAAGGAAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End