Plant MITE

SE2020084

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5286
Medicago truncatula
SE2020084
Mutator
M36
MtChr5:17446033-17446370
ATATATATA
ATATATATATATATATATATATATGGGGTTTGCTAGAACACACCCACTAGTTTTTATGTGGGAGTCTTTTAGCAA

Secondary structure and sequence

TSD TIR

5'

3'

                       T                C   C                    C         ---AGC     TTAAGGTGTATTTAACCACTTTTTAGTTATTCACTTGTTAAAATACTCCTTCTAAAAAATAAGTGGGTGTATTCCAGCAAATGCC
ATATATATATATATATATATATA GGGGTTTGCTAGAACA ACC ACTAGTTTTTATGTGGGAGT TTTTAGCAA      TACAC                                                                                     
||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||| |||||||||      |||||                                                                                      
TATATATATATATATATATATAT CCCTAAACGATCTTGT TGG TGATCAAAAATATATCCTCA AAAATCGTT      TGATT                                                                                     
                       -                A   A                    C         CAATAT     TTAAAATTATTTATGTAGAATTCCATATACAACGATATTGTGTGGAAGATTTTTTTGTTCACCCACACAAGATCGTTTAGGATAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020084

ATATATATATATATATATATATATGGGGTTTGCTAGAACACACCCACTAGTTTTTATGTGGGAGTCTTTTAGCAAAGCTACACTTAAGGTGTATTTAACCACTTTTTAGTTATTCACTTGTTAAAATACTCCTTCTAAAAAATAAGTGGGTGTATTCCAGCAAATGCCTATAGGATTTGCTAGAACACACCCACTTGTTTTTTTAGAAGGTGTGTTATAGCAACATATACCTTAAGATGTATTTATTAAAATTTTAGTTATAACTTGCTAAAACACTCCTATATAAAAACTAGTAGGTATGTTCTAGCAAATCCCTATATATATATATATATATATAT

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