Plant MITE

SE2030086

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5288
Medicago truncatula
SE2030086
hAT
Hat10
MtChr6:7166830-7167037
CTAGCAAA
GC

Secondary structure and sequence

TSD TIR

5'

3'

     CTA  AAAC           ------     TCCTC    TA    -   A  TGTGTCGGACATGTGTCGTATCCAACACCAACACAACACCAACACATATAATTAC
        GC    TATGAAGCACG      GACAC     GGAT  GACG TGT CC                                                       
        ||    |||||||||||      |||||     ||||  |||| ||| ||                                                        
        CG    ATACTTTGTGC      CTGTG     TTGT  GGTT GTG TG                                                       
CACCTGAA  ATCA           TTATGT     ----C    --    T   C  TGCTTGTGACTATGTGACTGTGACAATTATTAAATTCTTTTAGTGTATTAAGTCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030086

CTAGCAAACTATGAAGCACGGACACTCCTCGGATTAGACGTGTACCTGTGTCGGACATGTGTCGTATCCAACACCAACACAACACCAACACATATAATTACACTGAATTATGTGATTTTCTTAAATTATTAACAGTGTCAGTGTATCAGTGTTCGTGTCGTGTTTGGTGTTCGTGTCTGTATTCGTGTTTCATAACTAGCAAGTCCAC

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