SE2030092

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5294
  • Medicago truncatula
  • SE2030092
  • hAT
  • Hat11
  • MtChr5:7839182-7839747
  • TTCATAGT
  • CTCTGAAGCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTCATAGT  C        CC    G  TAAAATGCATAACGTACCGTGTATTCATTGAGTATCCTGCACCGATACTTGCCCGATACGTATTCGGAGAGTATCTAAATATTAAATTTTATTTTTTTAAAAAATAATTATCCGATACATCACGATACGCATGGATACTTATGTTTTTTATATTATTTTGATTTCTGTTTTTTTTTTTAAAAAAAAATAAGAATAAAAACATTATATTACTATAATATATATACATTTCCTTTATCTTTCTTTGGTGCCCGTACG
        CT TGAAGCCC  GATA TT                                                                                                                                                                                                                                                               
        || ||||||||  |||| ||                                                                                                                                                                                                                                                               A
        GA ACTTCGGG  TATG CA                                                                                                                                                                                                                                                               
TGATACTT  C        CT    -  CTATGCTATACCTATGCTATGACGTGGCTATGCGGCTATCTCTTTTTAAAGTTTTTAGTTCTATGCTATGCCGACACTATGCAATTATTTTTTTTTTAATATATTAATTTACATAATATATTAATATTGGTTAAAAAATTATACGTTCATATAATTGTTTGTGTTCTTTGGTCCGAGCATCGTGTAATTATATTTATATTATAACTGCTAATTCTCTTTCCCTTTCTACGTTAACCAACACACCACACCACACCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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