SE2020094

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5296
  • Medicago truncatula
  • SE2020094
  • Mutator
  • M40
  • MtChr4:2168680-2169116
  • AATTTTTTA
  • GGTTTAATTGCATGTTTGATCTCTTATGTTTATTTTAGTTTTTAAGTTGGTCCCTTATGTTTTAAAAATTTTAAGTTGGTCCCTTACATTTTAAAAGTTTTAAGTTGGTCCAAAACGTTACTCACATTGGAATAAGTTAGTCCCTTCCACGACATGATATTGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
AATTTTTTA                                                                   A              C    A                                     A                     ---   GAC   ATA     TTTAAT    -  AAAAAAAATTAAAAAAAATGTTTTCAAATTGA
         GGTTTAATTGCATGTTTGATCTCTTATGTTTATTTTAGTTTTTAAGTTGGTCCCTTATGTTTTAAAA TTTTAAGTTGGTCC TTAC TTTTAAAAGTTTTAAGTTGGTCCAAAACGTTACTCAC TTGGAATAAGTTAGTCCCTTC   CAC   ATG   TTGAG      AAAA CA                                
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||   |||   |||   |||||      |||| ||                                T
         CCGAATTAACGTACAAACTAGGGAATGTAAATAAAATCAAAAATTCAACTAGGGAATACAAAATTTT AAAGTTCAACCAGG AATG AAAATTTTCAAAGTTCAACCAGGTTTTGCAATGAGTG AACCTTATTCAATCAGGGAAG   GTG   TAC   AACTT      CAAA GT                                
TTTTTTTAA                                                                   C              A    C                                     C                     TCA   AAT   --A     CTAAGC    T  TATACCCACTACTTTGAATTGAATAAATCTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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