SE2020096

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5298
  • Medicago truncatula
  • SE2020096
  • Mutator
  • M35
  • MtChr3:37280606-37281155
  • ATTCCTTGG
  • TGGCTTAATTACACTTTTGGTCCTACCATTTTGACCAACTCACGAACATGGTCATATCTTTTTTAAATCGAACAAAATCGTCCTTAAACTATATGTTTTTTGCAGTTTTAGTCTTATCTCCCTATTTCCAACTCCAGAAGCGCACATAAATGACAGTTTTAGTCCAACCACCTATGCTCAACTATGAAATAAACAAAGAATAAAACATGTGGGTACAAGGAATCTACTTTATTCAATACACTAACCTAATTTCCGAGAAATGTTACATATCTTAGAAATTAGG

Secondary structure and sequence

TSD    TIR
5'



3'
ATTCCT                        AC        C            A     AT                            T                             T     C              C                            C                      A         A       A          C              A    A     -----------TAA         C    A   T
      TGGCTTAATTACACTTTTGGTCCT  CATTTTGA CAACTCACGAAC TGGTC  ATCTTTTTTAAATCGAACAAAATCGTCC TAAACTATATGTTTTTTGCAGTTTTAGTC TATCT CCTATTTCCAACTC AGAAGCGCACATAAATGACAGTTTTAGT CAACCACCTATGCTCAACTATG AATAAACAA GAATAAA CATGTGGGTA AAGGAATCTACTTT TTCA TACAC              CCTAATTTC GAGA ATG 
      ||||||||||||||||||||||||  |||||||| |||||||||||| |||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||| |||||||||| |||||||||||||| |||| |||||              ||||||||| |||| ||| T
      ACCGAATTAATGTGAAAACCAGGA  GTAAAACT GTTGAGTGCTTG ACCAG  TGGAGAAAATTTAGCTTGTTTTAGCAGG ATTTGATATACAAAAAACGTCAAAGTCAG ATAGA GGATAAAGGTTGAG TCTTTGCGTGTATTTACTGTCAAAATCA GTTGGTGGATATGAGTTGGTAC TTATTTGTT CTTATTT GTACACCCAT TTCCTTAGATGAAA AAGT GTGTG              GGATTAAAG TTCT TAC 
TTCCTT                        AC        A            A     GT                            T                             T     A              A                            A                      C         C       A          A              C    C     TTTGGTTCTTTTTG         A    A   A

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End