Plant MITE

SE2020097

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5299
Medicago truncatula
SE2020097
Mutator
M41
MtChr8:36076354-36076543
ATATAATTT
TGACTGTTTCTTTTTCCACCCTATTAGGTTCTCACATGTCCTATGCGGTTCAGATTCTAAAATTCGAACGGC

Secondary structure and sequence

TSD TIR

5'

3'

ATATAATT  AC    T       C   C   T  GT C  ACA      ATG                       -----    ATAAAAATCTCATAA
        TG  TGTT CTTTTTC ACC TAT AG  T TC   TGTCCT   CGGTTCAGATTCTAAAATTCGAA     CGGC               
        ||  |||| ||||||| ||| ||| ||  | ||   ||||||   |||||||||||||||||||||||     ||||                
        AC  ACAA GAAAAAG TGG ATA TC  A AG   GCAGGA   GTTAAGTCTAAGATTTTAGGTTT     GTTG               
TTTAATAT  CA    T       A   T   C  AA T  --C      ---                       ATAAA    CACAAAAATCTCTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020097

ATATAATTTGACTGTTTCTTTTTCCACCCTATTAGGTTCTCACATGTCCTATGCGGTTCAGATTCTAAAATTCGAACGGCATAAAAATCTCATAAAATCTCTAAAAACACGTTGAAATATTTGGATTTTAGAATCTGAATTGAGGACGCGATAAACTCATATGGTAGAAAAAGTAACAACCATATAATTT

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