SE2020102

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5304
  • Medicago truncatula
  • SE2020102
  • Mutator
  • M4
  • MtChr1:26339598-26339895
  • ATATAAAAG
  • GATTAATAGATCTTTATCCCGGTAATATATGTCATTTTCAATTTTCCTCCCTATAATTTTTTTTTTATTTACCCCCTGAAAAAAAAAATTGTTTTGATTTACCTCCCTAATAGGCCAAACAAAAACCAAATATATTTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATATAAAAG         A          -GG       T        CAA                        T         C  AA                                              C   TAT       TT
         GATTAATAG TCTTTATCCC   TAATATA GTCATTTT   TTTTCCTCCCTATAATTTTTTTTT ATTTACCCC TG  AAAAAAAATTGTTTTGATTTACCTCCCTAATAGGCCAAACAAAAAC AAA   ATTTTTT  
         ||||||||| ||||||||||   ||||||| ||||||||   |||||||||||||||||||||||| ||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||| |||   |||||||  T
         CTAATTATC AGAAATAGGG   ATTATAT TAGTAAAA   AAAAGGAGGGATATTAAAAAAAAA TAAATGGGG AC  TTTTTTTTAACAAAACTAAATGGGGGGATTATCCGGTTTGTTTTTG TTT   TAAAGAA  
 AATATATA         C          GAG       C        TCC                        -         A  -A                                              C   ---       CT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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