Plant MITE

SE2020108

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5310
Medicago truncatula
SE2020108
Mutator
M44
MtChr4:13319692-13319866
ATTTGACAA
T

Secondary structure and sequence

TSD TIR

5'

3'

AT      A A --  -T   -  CTA --    TGTTTGTGTAAAAAGTTTTACACTGTCAGCCCATCACAACCAATCATCTGTGTGACTTT
  TTGACA G G  TA  AAC TT   T  GCAC                                                           
  |||||| | |  ||  ||| ||   |  ||||                                                            
  TAGTTT A C  AA  TAA TA   T  TGTC                                                           
AA      - - CT  AT   G  --- AA    ACAGCCAATTAGTGTTGACAATGGTTATCTTTGTAAACTGAAAGTAGACTTGGTGGAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020108

ATTTGACAAGAGTATAACTTCTATGCACTGTTTGTGTAAAAAGTTTTACACTGTCAGCCCATCACAACCAATCATCTGTGTGACTTTAAAGGTGGTTCAGATGAAAGTCAAATGTTTCTATTGGTAACAGTTGTGATTAACCGACACTGTAATATGAATTAAATCCATTTGATAA

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