Plant MITE

SE2020111

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5313
Medicago truncatula
SE2020111
Mutator
M47
MtChr7:15486691-15486865
GGGAAATGT
GGGAAATGTTAATGAGTGTTTTTAGGACACTCTTTAAACACTTTAAAT

Secondary structure and sequence

TSD TIR

5'

3'

   AAA       G         A  AC            C       --  T  GTTTTATATGAAAAGTTGTGTATTAAATGTATTG
GGG   TGTTAAT AGTGTTTTT GG  ACTCTTTAAACA TTTAAAT  GG AA                                  
|||   ||||||| ||||||||| ||  |||||||||||| |||||||  || ||                                   
CCC   ACAATTG TCACAGGAG CC  TGAGAAATTTGT AAATTTA  TC TT                                  
   AAA       A         C  CA            A       AA  -  TAATAAGAGAATCTTTCAGTTGATAATGTTAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020111

GGGAAATGTTAATGAGTGTTTTTAGGACACTCTTTAAACACTTTAAATGGTAAGTTTTATATGAAAAGTTGTGTATTAAATGTATTGAAAATTGTAATAGTTGACTTTCTAAGAGAATAATTTCTAAATTTAAAATGTTTAAAGAGTACCCCGAGGACACTAGTTAACAAAACCC

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