SE2020117

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5319
  • Medicago truncatula
  • SE2020117
  • Mutator
  • M8
  • MtChr7:22787045-22787344
  • TTAAAAAAG
  • AAAGGGTTAATTAAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAAA                TTTTA   C             C             A                 C   C                C       TTA        -  -------    TAAAATGTTGATGGAAAAATTTTAT
     AAAGGGTTAATTAAGT     GTC CTATAAATATTCA AGTTTTGTTTTTA TCCCTACAAAATAAAAT ACA TTTTTAGTTCTTGTGA ATTTTCC   AACATTTT AG       CGAC                         
     ||||||||||||||||     ||| ||||||||||||| ||||||||||||| ||||||||||||||||| ||| |||||||||||||||| |||||||   |||||||| ||       ||||                          
     TTTCCCAATTAATTCA     CAG GATATTTATAAGT TTAAAATAAAAAT AGGGATGTTTTATTTTA TGT AAAAATCAGGGATATT TAAAAGG   TTGTAAAA TC       TTTT                         
AAAAA                TTTAC   A             C             C                 A   A                T       TAG        A  AGTAATA    AAAAGGTAGTCGTAAAAATCAGGGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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