Plant MITE

SE2020123

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5325
Medicago truncatula
SE2020123
Mutator
M31
MtChr8:26099596-26099979
TTTTATATT
TATATTGGCTAAAATATGGTTTTGGTCCCTGCAAATATGCCTCGTTTTGGTTTTAGTCCCTGTAAAAAAAATTTGTTGTTTTTGGTCCTT

Secondary structure and sequence

TSD TIR

5'

3'

TTT    -TT                                 C                                                     AAATATTTTGTTTTTGAAAATAGTCCTTGCAGGGACTATTTCCAAAAACAAAATATTTTGCAGGGACCTTTTTCAAAATCAAAAGATTTTGCAGGG
   TATA   GGCTAAAATATGGTTTTGGTCCCTGCAAATATG CTCGTTTTGGTTTTAGTCCCTGTAAAAAAAATTTGTTGTTTTTGGTCCTTGCA                                                                                                
   ||||   ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||                                                                                                 
   ATAT   CCGATTTTATACCAAAATCAGGGACGTTTATGC GAGCAAAACCAAAATCAGGGACGTTTTTTTTAAACAACAAAAACCAGGGACGT                                                                                                
 TT    TTT                                 A                                                     TTATACGGAATAAAACCAAAACCAGGGACCGAGGTGAAAACACTACTAAACGTGTGCACCGTGTACTACTGATTTGGGTAAATAATCTCTTTATCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020123

TTTTATATTGGCTAAAATATGGTTTTGGTCCCTGCAAATATGCCTCGTTTTGGTTTTAGTCCCTGTAAAAAAAATTTGTTGTTTTTGGTCCTTGCAAAATATTTTGTTTTTGAAAATAGTCCTTGCAGGGACTATTTCCAAAAACAAAATATTTTGCAGGGACCTTTTTCAAAATCAAAAGATTTTGCAGGGACTATTTCTCTAATAAATGGGTTTAGTCATCATGTGCCACGTGTGCAAATCATCACAAAAGTGGAGCCAGGGACCAAAACCAAAATAAGGCATATTTGCAGGGACCAAAAACAACAAATTTTTTTTGCAGGGACTAAAACCAAAACGAGACGTATTTGCAGGGACTAAAACCATATTTTAGCCTTTTATATT

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