SE2020127

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5329
  • Medicago truncatula
  • SE2020127
  • Mutator
  • M8
  • MtChr2:9907578-9907846
  • TTAATTTAA
  • TTAAGGGTTAATTAAGTAAATGGTCCCTATAAATATTTAGAATTTTGTTTTTAATCCCTACAAAATAAAATAACACTTTTTAGTCCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAAT                          C       A                  A                 A                ATAAAA      G -C   A       TCCCTT        TTCTA
     TTAAGGGTTAATTAAGTAAATGGTCC TATAAAT TTTAGAATTTTGTTTTTA TCCCTACAAAATAAAAT ACACTTTTTAGTCCCT      ATTTTC T  AGC TTTTTAG      TCAAAAAT     
     |||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||      |||||| |  ||| |||||||      ||||||||      
     AATTCCCAATTAATTCATTTACTAGG ATATTTA AAGTCTTAAAATAAAAAT AGGGATGTTTTATTTTA TGTGAAAAATCAGGGA      TAAAAG A  TCG AAAAATC      GGTTTTTA     
  TTT                          A       -                  C                 G                -CACTA      G AT   -       ---CCT        CAACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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