Plant MITE

SE2030130

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5332
Medicago truncatula
SE2030130
hAT
Hat2
MtChr1:20340487-20340671
CTTGCAAG
CTTGCAAGCTATGAAGCAC

Secondary structure and sequence

TSD TIR

5'

3'

                   ----    ---  T -   GGATTAGGCGTGTCCCCGTGTCGTGTCGGACATGTTTCGTGTCAGACACCGACACCTAT
CTTGCAAGCTATGAAGCAC    GGAC   AC C CTG                                                           
|||||||||||||||||||    ||||   || | |||                                                            
GAACGTTCGATACTTCGTG    TGCC   GC C GTA                                                           
                   CCTA    TGT  - T   TCTGTGACTGTGCGGCTGTGGCGATTATTAAACTCTTTTAGTGTATTAAGTCACATTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030130

CTTGCAAGCTATGAAGCACGGACACTCCTGGGATTAGGCGTGTCCCCGTGTCGTGTCGGACATGTTTCGTGTCAGACACCGACACCTATAATTACACTGAATTATGTGATTTTCTCAAATTATTAGCGGTGTCGGCGTGTCAGTGTCTATGTCCGTGTCCGTATCCGTGCTTCATAGCTTGCAAG

Copy Cancel