SE2020131

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5333
  • Medicago truncatula
  • SE2020131
  • Mutator
  • M51
  • MtChr5:6877445-6877846
  • TTAAAATAG
  • GGCTTAAATAGGTCTTTCGTCCCTGCAAATATAGGCCATTTGAATTTTCATCCATGAAGTTACTAATCATTCCAATCTGCCACTGCAAATATTAATCATTTGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAAAATA                      C            C A           A   A              A                                  CTTT            GTTTTTTTTT   GAGATGGGCTATCATTAGCGACGTGGTGCCTATGTGGCAAGTGATGATTGGACGAGGTGGTTGGCT
        GGCTTAAATAGGTCTTTCGTCC TGCAAATATAGG C TTTGAATTTTC TCC TGAAGTTACTAATC TTCCAATCTGCCACTGCAAATATTAATCATTTGA    TGGTCCTAATTA          GCT                                                                  
        |||||||||||||||||||||| |||||||||||| | ||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||    ||||||||||||          |||                                                                   
        CCGAATTTATCCAGAAAGCAGG ACGTTTATATTC G AAACTTAAAAG AGG ACTTCAATGATTAG AAGGTTAGACGGTGACGTTTATAATTAGTAAACT    ATCAGGATTAAT          GTA                                                                  
TAAAATTA                      A            A C           C   G              G                                  TTTT            ----------   GACTAATCATTGAAATCCCTACTTTTAAGTTTACTATATATAAACGTCCCTGTTTTCTGGATAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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