SE2020137

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5339
  • Medicago truncatula
  • SE2020137
  • Mutator
  • M54
  • MtChr6:1368280-1368753
  • TTTAATTTT
  • GGCTTAATTGCATTTTTCCCCCTATAGTTTTTCAATTGTACGATTTTGCATCCCATTGTTTAAAACGAGCGATTTTTCCCCCTATAGTTTTCCCCCTTTCTGATTTTATGGTTCCCATGACATTTAGTGCTGATGTGTCTGTTATTTATCAATTAATATGTGCCACGTGTGTAA

Secondary structure and sequence

TSD    TIR
5'



3'
TTTAATTTT                    -C         T        A                              G     T                  C   C                                                         A                TTCCATTTTTTAAAAATAA      A         T      TTGA  G        A   GAA
         GGCTTAATTGCATTTTTCCC  CTATAGTTT TCAATTGT CGATTTTGCATCCCATTGTTTAAAACGAGC ATTTT CCCCCTATAGTTTTCCCC TTT TGATTTTATGGTTCCCATGACATTTAGTGCTGATGTGTCTGTTATTTATCAATTAAT TGTGCCACGTGTGTAA                   AAAAAA GGTATTTTT CAGATT    GA AAGGATGC CGT   
         ||||||||||||||||||||  ||||||||| |||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||                   |||||| ||||||||| ||||||    || |||||||| |||   A
         CCGAATTAACGTAAAAAGGG  GATATCAAA AGTTAACA GCTAAAACGTGGGGTAACAAATTTTGCTCG TAAAA GGGGGATATCAAAAGGGG AAG ACTAAAATACCAAGGGTACTGTAAATTACGACTACACAGACAATAAATAGTTAATTA ACACGGTGCACACATT                   TTTTTT CCATAAAAA GTCTAA    CT TTTTTATG GTA   
TTTTAATTT                    CA         C        C                              G     C                  -   T                                                         C                -------------------      A         -      TTAA  A        -   GTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End