SE2020143

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5345
  • Medicago truncatula
  • SE2020143
  • Mutator
  • M31
  • MtChr2:29475284-29475684
  • TAAATAAAG
  • AAGGCTAAAATATGATTTTGGTCCCTGCAAATATGTTTTGTTTTGGTTTTAGTCCCTGTAAAAATTTTTTATTGTTTTTGGTCCCTGCAAAATATTTTGTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAATA              A    G       C                         C       AAA      A                    -  A         T    ---     --  -    ---    TTTGAAAATAGTCCCTCAGTGACTATTTTCAAAAACAAAATATTTTGCAGGGACCTTTTTAAAAATCA
      AAGGCTAAAATATG TTTT GTCCCTG AAATATGTTTTGTTTTGGTTTTAGT CCTGTAA   TTTTTT TTGTTTTTGGTCCCTGCAAA AT TTTTGTTTT GAAA   ATAGT  CC CTTT   TGTT                                                                    
      |||||||||||||| |||| ||||||| ||||||||||||||||||||||||| |||||||   |||||| |||||||||||||||||||| || ||||||||| ||||   |||||  || ||||   ||||                                                                     
      TTCCGATTTTATAC AAAA CAGGGAC TTTATACGAAGCAAAACCAAAATCA GGACATT   AAAAAA AACAAAAACCAGGGACGTTT TA AAAGCAAAA CCAA   CAGGG  CG GGTG   ACAC                                                                    
AATAAA              C    A       A                         A       --A      A                    A  C         -    AAG     AC  G    AAA    TAATAAACGTGTGCACCGTGTACTACTGACTTGGGTAAATAATCTTTTTATCAGGGACGTTTTAGAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3