SE2020146

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5348
  • Medicago truncatula
  • SE2020146
  • Mutator
  • M30
  • MtChr4:22786892-22787244
  • TATAAATTA
  • TAGGATTAAATGCTCTTTTGGTCCCTTAACTTGATTTCAAATATCGGTTTGGTCCTAAGTAAGAAAAAGTCCGTTTAGATCCCCTAACTTTATTTAAAGTATCAATTTGGTCTTTTCTCTTAATTTAATTCAAAAAAACGTTAAATTTTGGTCCCTTAACTTATT

Secondary structure and sequence

TSD    TIR
5'



3'
TATAAAT    A          -                      C  A   C            --     G    A  CC           C   C                A             C                         A   T  TC  TT    --    TA
       TAGG TTAAATGCTC TTTTGGTCCCTTAACTTGATTT AA TAT GGTTTGGTCCTA  AGTAA AAAA GT  GTTTAGATCCC TAA TTTATTTAAAGTATCA TTTGGTCTTTTCT TTAATTTAATTCAAAAAAACGTTAA TTT GG  CC  AACT  TATT  
       |||| |||||||||| |||||||||||||||||||||| || ||| ||||||||||||  ||||| |||| ||  ||||||||||| ||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||| ||  ||  ||||  ||||  A
       ATCC AATTTACGAG AAAACCAGGGAATTGAACTAAA TT ATA CCAAACCAGGGT  TCATT TTTT CA  CAAATCTAGGG ATT AAATAAATTTCATAGT AAGCCAGGAAAGA AATTAAATTAAGTTTTTTTGCAATT AAA CC  GG  TTGA  ATGA  
ATTAAAT    A          G                      A  C   A            AT     A    C  TA           A   A                C             C                         C   T  CT  -T    TT    TT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End