Plant MITE

SE2010149

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5351
Medicago truncatula
SE2010149
Tc1/Mariner
St10
MtChr5:33968338-33968488
TA
TACTCCCTCTGGTCACTTTTATAAGCAAAAAACAACTTTTTAGGTTCATGGAATAATTAAGGTATCTAG

Secondary structure and sequence

TSD TIR

5'

3'

    CC   T      T            AA               C  G          -------   A     TCA
TACT  CTC GGTCAC TTTATAAGCAAA  ACAACTTTTTAGGTT AT GAATAATTAA       GGT TCTAG   
||||  ||| |||||| ||||||||||||  ||||||||||||||| || ||||||||||       ||| |||||    
ATGA  GAG CCAGTG AAATATTCGTTT  TGTTGAAAAATCTAA TA CTTATTGATT       CCA AGATT   
    AA   T      T            AG               A  A          ACATAAA   G     TAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE2010149

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE2010149