Plant MITE

SE2010153

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5355
Medicago truncatula
SE2010153
Tc1/Mariner
St14
MtChr3:7894404-7894703
TA
TACTCCCTCCGTCCCTAATTATAAGACCCTTTTGCTAAAA

Secondary structure and sequence

TSD TIR

5'

3'

     C                            CT    --------    GGGAATTAAGAAAGTGAATATTTGTATTAAAGTTGTTTGTAATTATTATTGTTTTTACAATATTATCCTTAAGAGAGAGAGTTAGTTTATGTTTTCCATATG
TACTC CTCCGTCCCTAATTATAAGACCCTTTTG  AAAA        TCAC                                                                                                      
||||| ||||||||||||||||||||||||||||  ||||        ||||                                                                                                       
ATGAG GAGGCAGGGATTAATATTCTGGGAAAAC  TTTT        CAGG                                                                                                      
     A                            TT    TTTTTAAA    GAAAAATATTCTGAGGAAACAATAAAGGTTGATGTAATTAATAAAGAAATGTATGTACGGGGATAAATAATATGTATAAAAAGAAGTTAGTCTTTATTTATC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010153

TACTCCCTCCGTCCCTAATTATAAGACCCTTTTGCTAAAATCACGGGAATTAAGAAAGTGAATATTTGTATTAAAGTTGTTTGTAATTATTATTGTTTTTACAATATTATCCTTAAGAGAGAGAGTTAGTTTATGTTTTCCATATGCTATTTATTTCTGATTGAAGAAAAATATGTATAATAAATAGGGGCATGTATGTAAAGAAATAATTAATGTAGTTGGAAATAACAAAGGAGTCTTATAAAAAGGGACAAATTTTTTTTTTTCAAAAGGGTCTTATAATTAGGGACGGAGAGAGTA

Copy Cancel