SE2020154

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5356
  • Medicago truncatula
  • SE2020154
  • Mutator
  • M59
  • MtChr8:3102432-3102702
  • TAAAAAATA
  • TAGGCTTAATACATGCTTTGGTCCCTCAACTTATTTTTGAATTTTATTTTGGTCCCTTAACTTTAAACCGTCTCAATTTGGTCCCATAACTTTACCTCCGTTTACCTAAGTGGTCCCTTCTGTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAAAA           C   C      C   C                                        CC                                                         TT
       TAGGCTTAATA ATG TTTGGT CCT AACTTATTTTTGAATTTTATTTTGGTCCCTTAACTTTAAA  GTCTCAATTTGGTCCCATAACTTTACCTCCGTTTACCTAAGTGGTCCCTTCTGTTAG  
       ||||||||||| ||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  T
       ATCCGAATTAT TAC AAACCA GGA TTGAATAAAAACTTAAAATAAAACCAGGGAATTGAAATTT  CAGAGTTAAACCAGGGTATTGAAATGGAGGCGAATGGATTCACTAGGGAAGACAATT  
ATAAAAA           A   T      A   A                                        AA                                                         TT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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