SE2020158

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5360
  • Medicago truncatula
  • SE2020158
  • Mutator
  • M61
  • MtChr7:33890527-33890891
  • TTTATAAAT
  • TTTATAAATGGCTTATTCAATCACTCGATCTCTTAACTTAATTGATTGTCTCAATTTGATCCTCTAATTATATAATTTGTACCAATTTGGTCCCCTATGTTTTGCTCTGTTGCTAGTTTTAGTCATTTATGTTAGTTTCTCTCAAAAAACGTTAACTTATGTAC

Secondary structure and sequence

TSD    TIR
5'



3'
         T  C     C      TC A                              A             TA                  C C         CTC                 A                 C             --TT   T  -CAAT     CCCCTAT  T
 TTTATAAA GG TTATT AATCAC  G TCTCTTAACTTAATTGATTGTCTCAATTTG TCCTCTAATTATA  ATTTGTACCAATTTGGTC C TATGTTTTG   TGTTGCTAGTTTTAGTC TTTATGTTAGTTTCTCT AAAAAACGTTAAC    ATG AC     TTAGT       GT 
 |||||||| || ||||| ||||||  | |||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||| | |||||||||   ||||||||||||||||| ||||||||||||||||| |||||||||||||    ||| ||     |||||       || T
 AAATATTT CC AATAA TTAGTG  C AGGGAATTGAATTAACTAACAGAGTTAAAC AGGGGATTAATAT  TAAACATGGTTAAATCAG G ATACAAAAC   ACAATGATCAAAATTAG AAATACAATCAAAGAGA TTTTTTGCAATTG    TGC TG     GATTA       CG 
T        -  A     A      TC -                              C             --                  A T         TAC                 G                 A             TCTT   -  ATTTT     -TTGCCT  T

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End