Plant MITE

SE2020159

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5361
Medicago truncatula
SE2020159
Mutator
M62
MtChr4:8082297-8082488
TTAAAATAT
GGGTAGCATTTGGGTGACATAGTTTTTGGGTGACATTG

Secondary structure and sequence

TSD TIR

5'

3'

TTAAAATAT                       T     G        GTGGCA   G        G   G  -AGAGAATGA  -TA          AA
         GGGTAGCATTTGGGTGACATAGT TTTGG TGACATTG      TTA TTCATTTT GAT GG          TC   TGAATGATTA  
         ||||||||||||||||||||||| ||||| ||||||||      ||| |||||||| ||| ||          ||   ||||||||||   
         CCCATCGTGAACCCACTGTATCG GAACC ACTGTAAC      GAT GAGTGAGA TTA TT          AG   ATTTATTGAT  
TATAAAATT                       T     -        ---AAG   A        A   G  AGTAAGAGAG  TAG          AA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020159

TTAAAATATGGGTAGCATTTGGGTGACATAGTTTTTGGGTGACATTGGTGGCATTAGTTCATTTTGGATGGGAGAGAATGATCTATGAATGATTAAAAATAGTTATTTAGATGAGAGAGAATGATTGATTAAGAGTGAGATAGGAACAATGTCACCAAGTGCTATGTCACCCAAGTGCTACCCTTAAAATAT

Copy Cancel