SE2020160

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5362
  • Medicago truncatula
  • SE2020160
  • Mutator
  • M2
  • MtChr4:2941962-2942164
  • TAAAGTTTG
  • AAGTTTGGAGAAATGATATTTGAACAACCACTTTTTGACAACTTTTGTGACAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA  G       AA                  --C          -C     T     CTTTCTCTCTCATACTC      TCCTTTTAGTGTCTCTATCTATTGTTTTGA
  AA TTTGGAG  ATGATATTTGAACAACCA   TTTTTGACAA  TTTTG GACAA                 ACATTA                              
  || |||||||  ||||||||||||||||||   ||||||||||  ||||| |||||                 ||||||                              T
  TT AAATTTT  TACTATAAACTTGTTGGT   GAAGATTGTT  AAAAC CTGTT                 ATTTAA                              
GC  G       GC                  AAA          AA     -     ----------------A      TATGTTTCTTTAAATCCATCACTGTGTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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