SE2020166

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5368
  • Medicago truncatula
  • SE2020166
  • Mutator
  • M64
  • MtChr8:28145451-28145751
  • TTTAATTAG
  • TTAATTAGACTTAAATGCATTTTTTGTCCTTTATGTTTGCCTTCGTAGCAATTTTGATCCCCTAACAAAAACAATGCAATTTTGACCCCCTAATTTTCTCAACTATGCT

Secondary structure and sequence

TSD    TIR
5'



3'
 T    TT  AC       C      T                T              AT  -      -     C    C   T                C   ----------AC      -AAGAA   G  ACG    CTAAAAAAGAG       TTGT
  TTAA  AG  TTAAATG ATTTTT GTCCTTTATGTTTGCC TCGTAGCAATTTTG  CC CCTAAC AAAAA AATG AAT TTGACCCCCTAATTTT TCA            TATGCT      GCC CC   TATC           ACCAAAA    
  ||||  ||  ||||||| |||||| |||||||||||||||| ||||||||||||||  || |||||| ||||| |||| ||| |||||||||||||||| |||            ||||||      ||| ||   ||||           |||||||     
  AATT  TC  AATTTAC TGAAAA CAGGGGATACAAACGG AGCATCGTTAAAAC  GG GGATTG TTTTT TTAC TTA AACTGGGGGATTAAAA GGT            ATACGA      CGG GG   ATAG           TGGTTTT    
TT    -T  CA       A      C                T              -C  A      C     T    A   T                C   ACAAATCCTTTT      GAAAAC   -  --A    --------AAA       TCAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End