Plant MITE

SE2020168

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5370
Medicago truncatula
SE2020168
Mutator
M65
MtChr4:34588818-34589018
ATTAAGGGA
TTAAGGGAAAATTGCTCTCCTCCCTTT

Secondary structure and sequence

TSD TIR

5'

3'

               A    -      A         T      TAAAA          CCTTAATT    -     A     T      C   C  --TCTT   AA      TT
                TTAA GGGAAA TTGCTCTCC CCCTTT     TTGCTCATTC        ATGT CCTAC TGAGT AACTCA GCT GG      TTC  CGTGAG  
                |||| |||||| ||||||||| ||||||     ||||||||||        |||| ||||| ||||| |||||| ||| ||      |||  ||||||   
                AATT CCCTTT AACGAGAGG GGGAAA     AACGAGTAAG        TGCA GGATG ACTCA TTGAGT CGA CT      AAG  GCACTC  
CGGGTTGGGGGGTGGG    A      -         -      -CAAA          --------    C     A     C      A   -  TTTTAC   CC      AA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020168

ATTAAGGGAAAATTGCTCTCCTCCCTTTTAAAATTGCTCATTCCCTTAATTATGTCCTACATGAGTTAACTCACGCTCGGTCTTTTCAACGTGAGTTAACTCACGCCGAACATTTTTCAGCATGAGTTCACTCAAGTAGGCACGTGAATGAGCAAAAACAAAGGGGGAGAGCAATTTCCCATTAAGGGTGGGGGGTTGGGC

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