SE2050175

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5377
  • Medicago truncatula
  • SE2050175
  • PIF/harbinger
  • To10
  • MtChr4:3256208-3256589
  • TAA
  • GTGTTTGTTTCAAGGTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAGGGT                TT TAATAT      C        GA    GGAAATGCAACATTCCCATGTTTGTTTCAAGTTTTGAAAATTTGTTCCCATGAATGTTATATTCCCAGGAATGTTATTTGCACATAATTTCTTCTATTGTTATTCCCATGCTTAAAGGATGAGAATCTAACATTCCCATGA
       GTGTTTGTTTCAAGGT  G      GATTCC GGGAATGT  CATT                                                                                                                                             
       ||||||||||||||||  |      |||||| ||||||||  ||||                                                                                                                                              
       CACAAACAAAGTTCCA  C      TTAAGG AACTTTAC  ATAA                                                                                                                                             
    ATT                TT TTTAAT      -        -T    AGATCCTTATCGTAAGGTTGAGTACACAAACAATTTTTAAATCTAAAGGACCTTTACAAAATCTTTAATAAATCAATTTTTCTATTTTTACTTTTATTTACACTCACCATCACCCTTCAATACCGTTCAACTCAAGATAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End
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