Plant MITE

SE2020181

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5383
Medicago truncatula
SE2020181
Mutator
M59
AC135504:8938-9207
AATATATAA
ATATATAAGGCTTAATACATGCTTTGGTCCCTCAACTTATTTTTGAATTCATTTTGGTCCCTTAACTTTAAACCGTCTCAATTTGGTCCGATAACTTTACCTCTGTTTACCTAAGTGGTCCCTTCTGTTAG

Secondary structure and sequence

TSD TIR

5'

3'

 A      AA                        C                -                        C           -G   G                                  C      TT
  ATATAT  GGCTTAATACATGCTTTGGTCCCT AACTTATTTTTGAATT CATTTTGGTCCCTTAACTTTAAAC GTCTCAATTTG  TCC ATAACTTTACCTCTGTTTACCTAAGTGGTCCCTT TGTTAG  
  ||||||  |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||  ||| |||||||||||||||||||||||||||||||||| ||||||  T
  TATATA  CCGAATTGTGTACGAAACCAGGGA TTGAATAAAAACTTAA GTAAAACCAGGGAATTGAAATTTG CAGAGTTAAAC  AGG TATTGAAATGGAGGCAAATGGATTCACCAGGGAA ACAATT  
AA      -A                        A                A                        A           AA   -                                  T      TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020181

AATATATAAGGCTTAATACATGCTTTGGTCCCTCAACTTATTTTTGAATTCATTTTGGTCCCTTAACTTTAAACCGTCTCAATTTGGTCCGATAACTTTACCTCTGTTTACCTAAGTGGTCCCTTCTGTTAGTTTTTTTAACATAAGGGACCACTTAGGTAAACGGAGGTAAAGTTATGGAAACAAATTGAGACAGTTTAAAGTTAAGGGACCAAAATGAAATTCAAAAATAAGTTAAGGGACCAAAGCATGTGTTAAGCCAATATATAA

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