Plant MITE

SE2020192

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5394
Medicago truncatula
SE2020192
Mutator
M70
MtChr4:24139020-24139224
ACAATCAAA
GGGAAATGTTAATTTGTACCCTTAGAATACATGTTAAGAATTCCATTAATAGAAATTA

Secondary structure and sequence

TSD TIR

5'

3'

ACAATCAAA   AA            A       AA          ---------GA      T    ----    A   TGTATT      -T       TT    GCT
         GGG  ATGTTAATTTGT CCCTTAG  TACATGTTAA           ATTCCA TAAT    AGAA TTA      GAAAAT  GTGTTAA  TATT   
         |||  |||||||||||| |||||||  ||||||||||           |||||| ||||    |||| |||      ||||||  |||||||  ||||    
         CCC  TACAATTGAACA GGGAATC  GTGTACAATT           TAAGGT ATTA    TCTT AAT      TTTTTA  TATAATT  GTAA   
AAACTAACA   AG            A       CC          TGTAATCAAAG      T    CCAT    A   TACCTT      CT       -T    AAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020192

ACAATCAAAGGGAAATGTTAATTTGTACCCTTAGAATACATGTTAAGAATTCCATTAATAGAAATTATGTATTGAAAATTGTGTTAATTTATTGCTCAAAATGTTTAATATTCATTTTTTTCCATTAAATTCTTACCATTATTGGAATGAAACTAATGTTTAACATGTGCCCTAAGGGAACAAGTTAACATGACCCACAATCAAA

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