Plant MITE

SE2020193

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5395
Medicago truncatula
SE2020193
Mutator
M71
MtChr1:31746711-31746907
ATAATTAAA
TAATTAAAGAAATTAGTTAGTATGTTCTGTTAGTGTACAATTATTTTACACATGCATCAAACAATGTGTTGCTACGTCAATTAATGAATATGAAAAC

Secondary structure and sequence

TSD TIR

5'

3'

 A      AA  AA              C                               AAA         G              GA     AA   ACA
  TAATTA  GA  TTAGTTAGTATGTT TGTTAGTGTACAATTATTTTACACATGCATC   CAATGTGTT CTACGTCAATTAAT  ATATG  AAC   
  ||||||  ||  |||||||||||||| |||||||||||||||||||||||||||||||   ||||||||| ||||||||||||||  |||||  |||    
  ATTAAT  CT  AATTAATCATACGA ACAATCACATGTTAATAAAATGTGTATGTAG   GTTGCACAA GGTGTAGTTAATTA  TATAC  TTG   
AA      -A  AA              A                               ---         A              --     AG   AGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020193

ATAATTAAAGAAATTAGTTAGTATGTTCTGTTAGTGTACAATTATTTTACACATGCATCAAACAATGTGTTGCTACGTCAATTAATGAATATGAAAACACATGAGTTGACATATATTAATTGATGTGGAAACACGTTGGATGTATGTGTAAAATAATTGTACACTAACAAAGCATACTAATTAAAATCATAATTAAA

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