Plant MITE

SE2020202

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5404
Medicago truncatula
SE2020202
Mutator
M33
MtChr4:19304175-19304365
ATTTAAAGG
AAGGGTCATGTTAACTTGTGTCTTTAGGGCACATGTTAAGGTTTCTATAAAGAGCAAAT

Secondary structure and sequence

TSD TIR

5'

3'

 ATTTA     TC             T                     T  TAT     -GC    ATTT     --  AACATTAAATTTTAATTGCGT
      AAGGG  ATGTTAACTTGTG CTTTAGGGCACATGTTAAGGT TC   AAAGA   AAAT    ATTAA  GA                     
      |||||  ||||||||||||| ||||||||||||||||||||| ||   |||||   ||||    |||||  ||                      
      TTCCC  TACAATTGAACAC GGAATCCCGTGTACAATTCCA AG   TTTCT   TTTA    ACGCA  TT                     
AATTTA     TT             T                     T  ---     ATC    --AT     AC  TTAACACAGTTAAATAAAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020202

ATTTAAAGGGTCATGTTAACTTGTGTCTTTAGGGCACATGTTAAGGTTTCTATAAAGAGCAAATATTTATTAAGAAACATTAAATTTTAATTGCGTAAAAAATAAATTGACACAATTTTCAACGCATAATTTCTATCTTTGATACCTTAACATGTGCCCTAAGGTCACAAGTTAACATTTCCCTTATTTAA

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