SE2020203

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5405
  • Medicago truncatula
  • SE2020203
  • Mutator
  • M39
  • MtChr1:17952199-17952581
  • TTAAAAAAG
  • GGCTAAAATATGGTTTTGGTCCCTGCAAATATGCCTCATTTTGGTTTTAGTCCCTGTAATATTTTTTTGTTTGTTTTTGATCCCTGCAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAAAAAA                                     A                     T      T    T                       CT  --  -  GATTTT    CCTGGCTCCACTTTTGTGATGATTTGCACATGTGGCACATGATGAGTGAACCCATTTATTAGAAAAATAGTCC
        GGCTAAAATATGGTTTTGGTCCCTGCAAATATGCCTC TTTTGGTTTTAGTCCCTGTAA ATTTTT TGTT GTTTTTGATCCCTGCAAATATGT  CG  TT TT      GGTC                                                                         
        ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||  ||  || ||      ||||                                                                         C
        CCGATTTTATACTAAAACCAGGGACGTTTATACGGAG AAAACTAAAATCAGGGACATT TAAAAA ACAA CAAAAACTAGGGACGTTTTATAA  AA  AA AC      TTTT                                                                         
AAAAATTA                                     C                     T      C    -                       --  CA  A  ------    ATCAGGGAGGTCCCTGATAAAAGTCTTCATTTTATAATACGTCCCTGCAAAAATGTTTAGTTTTCTAAAACGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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