SE2020207

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5409
  • Medicago truncatula
  • SE2020207
  • Mutator
  • M67
  • MtChr8:24517874-24518342
  • TATGTTTTA
  • TAGGCTAAATTACCTTTTTAGTCATTTAACTATTTAATTAGTATCGGATTGGTCCTCCAACTAAAAATTGATTTATTTCGGTCCTCTAAGTTTCTCACCGTTACTACATTTAGTCTTTTCTGTTAGTTTTATTCAAATAAACGTTAGGGTTTGTGTTATGTGGGTCCTCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATGTTT     TA            A   A            A  A        T        C                                                                                   C                       ------     A  -- TTATT     GTATCATTTTGGTCCTATTCCTCGTTAAGGTATTATGATTAA
       TAGGC  AATTACCTTTTT GTC TTTAACTATTTA TT GTATCGGA TGGTCCTC AACTAAAAATTGATTTATTTCGGTCCTCTAAGTTTCTCACCGTTACTACATTTAGTCTTTTCTGTTAGTTTTATTCAAATAAA GTTAGGGTTTGTGTTATGTGGGT      CCTCT AC  T     TATTA                                          
       |||||  |||||||||||| ||| |||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||      ||||| ||  |     |||||                                          A
       ATCCG  TTAATGGAAAAA CAG AGATTGATAAAT AA CATAGCCT ACCAGGAG TTGATTTTTAACTAAATAAAGCCAGGAGATTCAAAGAGTGGCAATGATGTAAATCAGGAAAGACAATCAAAATAAGTTTATTT CAATCCCAAACACAATACACCCA      GGAGG AC  A     GTGTG                                          
ATTTTGT     CA            C   G            C  C        C        A                                                                                   C                       TAGACT     -  AA -----     TATATATACTTGGTGTTGTCAATGGTTATTATAGTCAGTAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3