SE2020208

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5410
  • Medicago truncatula
  • SE2020208
  • Mutator
  • M40
  • MtChr4:9660013-9660454
  • TATAATTTA
  • TAGGCTTAATTGCATGTTTAGCCCCTTATATTTATTTTAAATTTTAGGTTGGTCACTTATGTTTTAAACATTTTAAGTTGGTCCTATATATTTTAAAAGTTT

Secondary structure and sequence

TSD    TIR
5'



3'
TATAATT    C                C       A         AA   T         A   A         CA            -   A   A            CATGT    CCAAAACATTACTCATAGTTGAATAAATTAGTCTCTTCCACCACATAATCTTGAGTTTAATAAAACAATAAAAAATAAAAATATATTTTAAAATTGATTTTATAAA
       TAGG TTAATTGCATGTTTAG CCCTTAT TTTATTTTA  TTT AGGTTGGTC CTT TGTTTTAAA  TTTTAAGTTGGT CCT TAT TTTTAAAAGTTT     TGGT                                                                                                          
       |||| |||||||||||||||| ||||||| |||||||||  ||| ||||||||| ||| |||||||||  |||||||||||| ||| ||| ||||||||||||     ||||                                                                                                           
       ATCC AGTTAACGTACAAATT GGGAATA AAATAAAAT  AAA TTCAACCAG GAA ACAAAATTT  AAAGTTCAACCA GGA ATA AAAATTTTTAAA     TTCA                                                                                                          
  TTCAT    A                A       C         CC   T         G   A         TC            T   -   C            ----A    AGCATGAAACCAAACTTTGCAATAAGTATAACTTTATTCAATCATGAAACCAGTGAACCGGCAAATCTCTATTTCCAACTCTTATAACCACGGCCTAAACTTGAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End