SE2020220

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5422
  • Medicago truncatula
  • SE2020220
  • Mutator
  • M52
  • MtChr1:21188951-21189414
  • TAAAATCTA
  • TAGGCTTAAATGCTCTTTTGGTTCCTTAATTATTTAATTGGTATCGCTTTGGTCCCTTAACTAAAAAAAAGATTGTTTGAGGATTTTAAGTTTTTTTTAGTCTCGTTTTGGTCCCTTCTGTTAGGTTTCCGTTAGGGTTTTAAAAAAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAATC                                                                                                  -                                   AG        A       -TAACTCC                           C    TTTT                    TT   T     T
       TAGGCTTAAATGCTCTTTTGGTTCCTTAATTATTTAATTGGTATCGCTTTGGTCCCTTAACTAAAAAAAAGATTGTTTGAGGATTTTAAGTTTTTTTT AGTCTCGTTTTGGTCCCTTCTGTTAGGTTTCCGTT  GGTTTTAA AAAAAAT        TGGACACGTGTCACCTTGTCATTGGCT TGAG    TTTTTTTTTTTACAAAAAAA  TAT ATTTT 
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||| |||||||        ||||||||||||||||||||||||||| ||||    ||||||||||||||||||||  ||| ||||| T
       ATCCGAATTTACGAGAAAACCAGGGAATTGATAAATTAACCATAGCGAAACTAGGGAATTGATTTTTTTTTTAACAAACTCCTAAAATTTAAAAAAAA TCAGAGCAAAACCAGGGAAGACAATCCAAAGGCAA  TCAAAATT TTTTTTG        ACCTGTGCACAGTGGAACAGTAACCGA ACTC    AAAAAAAAAAATGTTTTTTT  ATA TAAAA 
ATCTAAA                                                                                                  A                                   --        A       CAATTCAC                           A    --TT                    TT   -     T
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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