SE2010221

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5423
  • Medicago truncatula
  • SE2010221
  • Tc1/Mariner
  • St21
  • MtChr5:21017702-21018047
  • TA
  • TACTCCCTCCGTCCCAAATTATAAGCAAAAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
                AAT                    -   ACACTTA TAAGAAAACTAAAACATAAGAATTTGGAGTATAATTTTTTGTGTTTTCTTTGGAAAAAGTTTTATAGGAAGATGTAAAAACAATTTTCATTGGCTATTGGTTATGGAAAAAATGAAAGAGAGGGAA
TACTCCCTCCGTCCCA   TATAAGCAAAAAAAAAAAAA ATC       T                                                                                                                              
||||||||||||||||   |||||||||||||||||||| |||       |                                                                                                                               
ATGAGGGAGGCAGGGT   ATATTCGTTTTTTTTGAGTA AAG       A                                                                                                                              
                ATT                    A   ------- AATAGGGTTTTATATTCGTTTTTTCTGTTTGAAAATAGAATAAATTAGAACAAAAAAATTTTTTAGAAAAAAGGTTCTTTTTGAAAACAAATAAGAGTACTTTAATTTACGTTTAATGTAAGTTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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