Plant MITE

SE2030224

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5426
Medicago truncatula
SE2030224
hAT
Hat17
MtChr7:23073483-23073862
GTTTATAA
TTATAAG

Secondary structure and sequence

TSD TIR

5'

3'

GT       -----    G   -----   -       -A  G  AAGA  TCAACTGAGTTGGGCATCCCAAAGTGATGGGCCTCAAGAAAAAAAAATATTGCTCAATATCCCCACCCCCACTCAGAAAAGAAAAATAAATATGTTTCATGTTTCAATTTCTAAGTAAAAAAATCATGTTCCATGTTTCAATTTCTAA
  TTATAAG     GAGG CCG     TTT TTTGGGG  GT CA    GC                                                                                                                                                    
  |||||||     |||| |||     ||| |||||||  || ||    ||                                                                                                                                                     
  AATATTT     AGCA GCA     TAA CTCCGAG  GA GA    GT                                                                                                                                                    
 G       GTCAC    G   TATTT   C       CC  -  ----  ATCATTTTTATTCGGGGATTATTTTTTTGCGTGTTAAAAAAAATTTTCTAATTAGAAGATAAATTTAACTTTTATTGTGAGCATATTACTACTAATTGGTGACTTTAGTTTTAATCGTTAATAAAAATGATTTCTGGACAAAAAATTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030224

GTTTATAAGGAGGGCCGTTTTTTGGGGAGTGCAAAGAGCTCAACTGAGTTGGGCATCCCAAAGTGATGGGCCTCAAGAAAAAAAAATATTGCTCAATATCCCCACCCCCACTCAGAAAAGAAAAATAAATATGTTTCATGTTTCAATTTCTAAGTAAAAAAATCATGTTCCATGTTTCAATTTCTAAGTTAAAAAACAGGTCTTTAGTAAAAATAATTGCTAATTTTGATTTCAGTGGTTAATCATCATTATACGAGTGTTATTTTCAATTTAAATAGAAGATTAATCTTTTAAAAAAAATTGTGCGTTTTTTTATTAGGGGCTTATTTTTACTATGAGAGCCGAGCCTCCAATTTTATACGGACGACACTGTTTATAAG

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