SE2020227

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5429
  • Medicago truncatula
  • SE2020227
  • Mutator
  • M77
  • MtChr6:13070079-13070434
  • TTTATTTTA
  • TAGGTTTAATATATGTTTATCCTTCTATAATATAAGCGGTTTTTGGTTTACCCCTATAAAAATAAAATTGCTTAGATTCCAACCCTAAATTTGAAGATTTTTTGGTTTTGGTCGTTCATGA

Secondary structure and sequence

TSD    TIR
5'



3'
TTTATTT    T                 TT  A      A  C         T     - -         T       C               -A             TT         T G  C    --CATC   -    AAAACTTAAGGTACTTTCGCCCCTTGTAATTTTAGA
       TAGG TTAATATATGTTTATCC  CT TAATAT AG GGTTTTTGG TTACC C CTATAAAAA AAAATTG TTAGATTCCAACCCT  AATTTGAAGATTT  TGGTTTTGG C TT ATGA      AAA TTAC                                    
       |||| |||||||||||||||||  || |||||| || ||||||||| ||||| | ||||||||| ||||||| |||||||||||||||  |||||||||||||  ||||||||| | || ||||      ||| ||||                                    A
       GTCC AATTATATACGAATGGG  GA ATTATA TC CCAAAGACT AATGG G GATATTTTT TTTTAAC AATCTAAGGTTGGGA  TTAAACTTCTAAG  ACCAAAACT G AA TACT      TGG ATGT                                    
ATTTTAT    C                 -T  C      A  A         T     A A         T       A               CA             TC         T G  T    TAAAAT   C    TTTAGCTACTATACCATCTACACCTTACGGCTTTAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End