SE2030231

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5433
  • Medicago truncatula
  • SE2030231
  • hAT
  • Hat18
  • MtChr5:33636827-33637235
  • GTCTAACA
  • GTCTAACACTCTGTTGTGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
   CTA  A         G  T   GAAATGCGGCATGGCGTGGCCAACCTAATAATTGGCGTGGTGCGGGAGCAGGGCGCGTAGCGGGCGCTATTTCGGTGGTGTGGCCACTAATAAATTTAATACTAGATACCATACTATTCAAAAAGAAATACTAAAATACCTTAAACATTACTCAAAATTTCATGATGTATTCATAATATG
 GT   AC CTCTGTTGT AA GCG                                                                                                                                                                                    
 ||   || ||||||||| || |||                                                                                                                                                                                    A
 CA   TG GAGACAACA TT TCG                                                                                                                                                                                    
A  ATC  -         G  T   CCGGCGCGGTCGGCGATATCGTCTCGCATCGCCTTTTTAGTCCTGGTGGCGTGGTCCGGCGCAGCCGTGTACAGTCTTCACCTTTCGCCGGTTTCACCTGGATATTTATCATTTTGTTATTGAACATGATCAACATATATTAACCATAATCGGTAAAAGCTAAAACGATAGGGAAAATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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