SE2020233

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5435
  • Medicago truncatula
  • SE2020233
  • Mutator
  • M79
  • MtChr4:1653714-1654082
  • TATTTTTTA
  • GGCTTAATAGCAGTTTTTGTCTCCTACTTAAAAGTTGCGATTTTGATTCCTTAACAAAATAAAATACAAAACCGTCCCTTAAGTATTGCCCTTTTGCAGTTTTCGCTCCCAGACCAATTTTGATCAAATCAATGCACACATGGATGTCACATGTGTATTTTTTTAATTAA

Secondary structure and sequence

TSD    TIR
5'



3'
TATTTTTTA                 T   T    ---C    -              A        C               A   T                   -----         -CG        CC        T    -    T  AC  A         CA      T       A    AA
         GGCTTAATAGCAGTTTT GTC CCTA    TTAA AAGTTGCGATTTTG TTCCTTAA AAAATAAAATACAAA CCG CCCTTAAGTATTGCCCTTT     TGCAGTTTT   CTCCCAGA  AATTTTGA CAAA TCAA GC  AC TGGATGTCA  TGTGTA TTTTTTA TTAA  
         ||||||||||||||||| ||| ||||    |||| |||||||||||||| |||||||| ||||||||||||||| ||| |||||||||||||||||||     |||||||||   ||||||||  |||||||| |||| |||| ||  || |||||||||  |||||| ||||||| ||||  A
         CCGAATTATTGTCAAAA CGG GGAT    AATT TTCAACGCTAAAAT GGGGGATT TTTTATTTTATGTTT GGT GGGGATTCATAACGGGAAA     ACGTCAAAA   GGGGGTTT  TTAAAACT GTTT AGTT CG  TG ACTTACGGT  ACATAT AAAAAAT AATT  
 ATTTTTTA                 T   -    ACAA    C              C        A               -   -                   AAAAA         CTG        TA        -    C    T  AC  C         TC      C       A    AA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End