Plant MITE

SE2020239

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5441
Medicago truncatula
SE2020239
Mutator
M9
MtChr3:25251138-25251468
TAAAAAAAA
AGGCTTAATAGCAGTTTTAGCCTCCTAATTTTTTTAAAGTTGCGATTTTGGCCCTTTAAGAAAAAAAAACTACAAAACCGCCCCCTAAGTTTTGCATTTGTGGCAGTTTTGGCCCCCAAGGCCAATTTT

Secondary structure and sequence

TSD TIR

5'

3'

TAAAAAAA                  A              TTA              -      T        AAA                            T                   -C            ------------------------   TCGGTCCGTGGCAC
        AGGCTTAATAGCAGTTTT GCCTCCTAATTTTT   AAGTTGCGATTTTG GCCCTT AAGAAAAA   ACTACAAAACCGCCCCCTAAGTTTTGCA TTGTGGCAGTTTTGGCCCC  AAGGCCAATTTT                        GAC              
        |||||||||||||||||| ||||||||||||||   |||||||||||||| |||||| ||||||||   |||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||                        |||              C
        TCCGAATTATCGTCAAAA CGGGGGATTGAAAG   TTTAATGCTAAAAC CGGGGA TTCTTTTT   TGATGTTTTGGCGGGGGATTCAAAACGT GACATCGTCAAAACTGGGG  TTCCGGTTAAAA                        GCA              
AAAAAAAA                  G              TGC              T      -        ---                            T                   TA            ACCATTTTTTTATTTATTTATTGT   CCGTGTAGTGAATC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020239

TAAAAAAAAGGCTTAATAGCAGTTTTAGCCTCCTAATTTTTTTAAAGTTGCGATTTTGGCCCTTTAAGAAAAAAAAACTACAAAACCGCCCCCTAAGTTTTGCATTTGTGGCAGTTTTGGCCCCCAAGGCCAATTTTGACTCGGTCCGTGGCACCCTAAGTGATGTGCCACGTGTTATTTATTTATTTTTTTACCAAAAATTGGCCTTATGGGGTCAAAACTGCTACAGTTGCAAAACTTAGGGGGCGGTTTTGTAGTTTTTTCTTAGGGGCTCAAAATCGTAATTTCGTGAAAGTTAGGGGGCGAAAACTGCTATTAAGCCTAAAAAAAA

Copy Cancel