Plant MITE

SE2020242

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5444
Medicago truncatula
SE2020242
Mutator
M11
MtChr4:26244122-26244314
TTTCAATTA
AGGGAAATGTTAACGAGTGCCTCCGGGACACTCTTTAAGGACC

Secondary structure and sequence

TSD TIR

5'

3'

TTTCAATT    AAA            C  C     CAC          -  ATTAATA      TTTTATGAAAATATGTGTAATCAATGTATTGAAAT
        AGGG   TGTTAACGAGTG CT CGGGA   TCTTTAAGGA CC       GTAAGT                                   
        ||||   |||||||||||| || |||||   |||||||||| ||       ||||||                                    
        TCCC   ACAATTGTTCAC GA GTCCT   AGAAATTTCT GG       TTTATA                                   
ATTAAATT    AGA            A  A     ATA          A  ------G      TTTTTTATAAGGAATTTTTTTCCATTTACAATGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020242

TTTCAATTAGGGAAATGTTAACGAGTGCCTCCGGGACACTCTTTAAGGACCATTAATAGTAAGTTTTTATGAAAATATGTGTAATCAATGTATTGAAATTTGTAACATTTACCTTTTTTTAAGGAATATTTTTTATATTTGGGATCTTTAAAGAATATCCTGAAGACACTTGTTAACAAGACCCTTTAAATTA

Copy Cancel