Plant MITE

SE2030244

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5446
Medicago truncatula
SE2030244
hAT
Hat2
MtChr6:5797557-5797753
GTAACAAC
ACCTATGAAGCACGGAGACTCC

Secondary structure and sequence

TSD TIR

5'

3'

GTAACA                ----   T  TC    TAGGCGTGTCCCAGTGTCGGACACGTGTCGTGTCCGATACCGACACGACACCGACACTTGTAA
      ACCTATGAAGCACGGA    GAC CC  GGAT                                                               
      ||||||||||||||||    ||| ||  ||||                                                                
      TGGATACTTCGTGCCT    CTG GG  CTGT                                                               
CAACAA                ATGC   T  -T    GCTGTGCCTGTGACTGTGCGGCTGTGTTGATTATTAAACTTTTATAGTGTATTAAGCCACATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030244

GTAACAACCTATGAAGCACGGAGACTCCTCGGATTAGGCGTGTCCCAGTGTCGGACACGTGTCGTGTCCGATACCGACACGACACCGACACTTGTAATTACACCGAATTATGTGATATTTTCAAATTATTAGTTGTGTCGGCGTGTCAGTGTCCGTGTCGTGTCTGGTGTCCGTATCCGTGCTTCATAGGTAACAAC

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