Plant MITE

SE2050246

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5448
Medicago truncatula
SE2050246
PIF/harbinger
To11
MtChr1:23470100-23470349
TTA
AGGGTGTGTTTGGATGGAGGGTTTAGGAGGGGAAGGAAGGGGAGGGTTTACTTTTCATTTTTAAATTACGGACACTATGAAATGTTTTATAAAA

Secondary structure and sequence

TSD TIR

5'

3'

TT               G                    A                   A                AC     A       --A     -------------------------A     CAAATTAAC
  AGGGTGTGTTTGGAT GAGGGTTTAGGAGGGGAAGG AGGGGAGGGTTTACTTTTC TTTTTAAATTACGGAC  TATGA ATGTTTT   TAAAA                          GTTAA         
  ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||  ||||| |||||||   |||||                          |||||         A
  TCCCACACAAACCTA CTCCCAAATCTTCCTTTTCC TTCCTTCCCAAATGAAAAG AAAAATTTAATGTCTG  ATATT TACAAAA   ATTTT                          TACTA         
AT               A                    C                   C                AT     G       AAG     ATTTAATTCACACTAACTTCATAATA     GCAAATAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2050246

TTAGGGTGTGTTTGGATGGAGGGTTTAGGAGGGGAAGGAAGGGGAGGGTTTACTTTTCATTTTTAAATTACGGACACTATGAAATGTTTTATAAAAAGTTAACAAATTAACATGATAAACGATCATATAATACTTCAATCACACTTAATTTATTTTAGAAAAAACATGTTATATAGTCTGTAATTTAAAAACGAAAAGTAAACCCTTCCTTCCCTTTTCCTTCTAAACCCTCAATCCAAACACACCCTTA

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