Plant MITE

SE2020248

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5450
Medicago truncatula
SE2020248
Mutator
M18
MtChr2:8357287-8357492
TTTTTAAAA
TTTTAAAAGAGAAATGCTAGCAATACTCATTTTT

Secondary structure and sequence

TSD TIR

5'

3'

T   T       AA               A     CAAC           CAC               ATG      A   AT   CCAC       TTTGGGT
 TTT AAAAGAG  ATGCTAGCAATACTC TTTTT    GCTCTCTCTAA   TCACTCTTTTATTGG   AAATCA TGT  GTC    CACTTTG       
 ||| |||||||  ||||||||||||||| |||||    |||||||||||   |||||||||||||||   |||||| |||  |||    |||||||       T
 AAA TTTTCTC  TACGATCGTTGTGAG AGAAG    TGGGAGAGATT   AGTGAGAGAATAACC   TTTAGT ACA  CAG    GTGAAAC       
A   T       AC               -     ACTT           ATA               AAA      A   CC   --AT       TTTTAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020248

TTTTTAAAAGAGAAATGCTAGCAATACTCATTTTTCAACGCTCTCTCTAACACTCACTCTTTTATTGGATGAAATCAATGTATGTCCCACCACTTTGTTTGGGTTCAATTTTCAAAGTGTAGACCCACAATGATTTAAACCAATAAGAGAGTGAATATTAGAGAGGGTTTCAGAAGAGAGTGTTGCTAGCATCACTCTTTTTAAAA

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